PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA178G00002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 190aa    MW: 22221.4 Da    PI: 7.3774
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA178G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.5e-1432120398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  k l+ +++l+++++ +p +fa+ hg+k   sk +t+e++ g   +++l  ++ ++++++++GW eF++a+ + eg  ++F+++g+s+f  +v +f+
  AA178G00002  32 K-LILPSTLNRKIMKIPPRFAKLHGSK--LSKFVTFETPMGFNRSIQL--KRIGEEIWFQEGWIEFAEAHSIAEGHLLMFEFNGKSTF--HVVIFD 120
                  4.44567777788********999977..8999***************..*******************************9998888..999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-2026121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-2028121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54729122IPR003340B3 DNA binding domain
CDDcd100178.80E-1330120No hitNo description
SMARTSM010193.4E-1530122IPR003340B3 DNA binding domain
PfamPF023626.4E-1230120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVTTRKMKTR ATSDSHHRPP SYPFSPVTKF LKLILPSTLN RKIMKIPPRF AKLHGSKLSK  60
FVTFETPMGF NRSIQLKRIG EEIWFQEGWI EFAEAHSIAE GHLLMFEFNG KSTFHVVIFD  120
VTASEIKYPF DEDKDVEIIE IMDDSDDSDH EPKKRTSDFG FHRILIDIDA MDSHEALKED  180
KRDFRGKQRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192068.18e-68AP2/B3 domain-containing protein
SwissprotQ9ZSH71e-69Y4158_ARATH; B3 domain-containing protein At4g01580
TrEMBLA0A087FZC02e-70A0A087FZC0_ARAAL; B3 domain-containing protein
STRINGAT4G01580.13e-67(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-69B3 family protein